Xin is Associate Professor in Dep. of Human Genetics at Univ. of Chicago. Xin completed his PhD in Computer Science in 2009 at University of Illinois at Urbana-Champaign, where he worked with Saurabh Sinha. Before his current position, Xin completed postdoc training with Dr. Hao Li at Department of Biochemistry of UCSF, and with Drs. Kathryn Roeder and Ziv Bar-Joseph at Lane Center for Computational Biology of Carnegie Mellon University. Xin is interested in statistical genetics and genomics, computational biology/bioinformatics and evolutionary genomics.
Kevin Luo
Staff Scientist
kaixuan@uchicago.edu
Kevin (Kaixuan罗凯旋) Luo completed his PhD in Computational Biology and Bioinformatics in 2016 from Duke University, where he was supervised by Dr. Alex Hartemink, and collaborated with Greg Crawford, David MacAlpine, and Li Ma. His PhD research focused on modeling the dynamics of genome-wide transcription factor and nucleosome occupancy. Kevin joined the lab in October, 2016. He is jointly supervised by Dr. Matthew Stephens, and in close collaboration with Dr. Chuan He. Kevin is interested in developing statistical and machine learning methods to better understand the mechanisms by which genetic variation impacts gene regulation.
Wesley Crouse
Postdoc
wcrouse@uchicago.edu
Wes received his Ph.D. in Bioinformatics and Computational Biology in 2019 from the University of North Carolina at Chapel Hill, advised by William Valdar and Samir Kelada. His dissertation research focused on Bayesian nonparametric approaches for genetic association. Wes joined the lab in Feb, 2021 and is jointly supervised by Dr. Matthew Stephens. He is interested in developing statistical methods for causal inference in biomedicine.
Lifan Liang
Postdoc
lifanl@uchicago.edu
Lifan Liang (梁力凡) received his PhD in Biomedical Informatics in 2021 from the University of Pittsburgh, advised by Dr. Songjian Lu. His PhD research focused on modeling biological mechanisms in cancer with machine learning methods. Lifan joined the lab in November, 2021. He is interested in single cell genomics and statistical genetics.
Xiaolong Sun
Postdoc
sxt1229@uchicago.edu
Xiaotong Sun (孙晓彤) received her PhD from Peking University in China. She was a visiting student from 2019 to 2021, and joined the lab as a postdoc in April, 2022. Xiaotong's PhD work focused on identifying disease-causing biological pathways. Her current projects aim at integrating single-cell genomic data with human genetic studies.
Jing Gu
PhD student
jinggu@uchicago.edu
Jing received her BS and MS in Biochemistry from UC San Diego, and started the PhD program in Genetics, Genomics and System Biology at the University of Chicago in 2019.
She joined the lab in September, 2020. She is interested in using statistical methods to integrate molecular traits and genetic associations to better understand complex disease etiology.
Ben Lai
PhD student
blai@ttic.edu
Ben (Boqiao) received his BS in Computer Science from Columbia University and BA in liberal arts study from Bard College. He joined the PhD program at Toyota Technological Institute at Chicago (TTIC) in 2018 and joined the lab in September 2020, jointly supervised by Dr. Jinbo Xu. He is interested in developing interpretable machine learning and statistical models to study biological sequences in various contexts.
Sheng Qian
PhD student
shengqian@uchicago.edu
Sheng Qian obtained his BS in Biometry & Statistics from Cornell University and in Applied Bioscience from Zhejiang University jointly in 2019. He joined the lab in July, 2019 as a research assistant, and then joined Human Genetics PhD program in 2020, and the lab in 2021. He is interested in the development and application of statistical genetics methods in precision medicine.
Chenwei (Will) Tang
Undergraduate student
sxt1229@uchicago.edu
Will Tang (汤辰炜) is an undergraduate student double-major in Biology and Computer Science. He joined the lab as a research assistant in 2021 Summer, learning about and working on statistical genetic projects.
Alumni
Postdoc
Siming Zhao was a postdoc, co-supervised by Dr. Matthew Stephens, from 2015 to 2021. She worked on statistical methods for analyzing somatic mutations in cancer, and for human genetic association data. She is now a tenure-track Assistant Professor at Dartmouth College.
Postdoc
Jean Morrison joined the lab in Oct, 2016 and was co-supervised by Dr. Matthew Stephens. Her work focused on methods for analyzing genetic data of multiple traits, including Mendelian Randomization. Jean is now a tenure-track Assistant Professor at Department of Biostatistics and University of Michigan, Ann Arbor.
Yuwen Liu
Postdoc
Yuwen (刘毓文) was a postdoc in the lab from July, 2015 to Jul, 2018. He is now a PI at Agricultural Genome Institute at Shenzhen, Chinese Academy of Agricultural Sciences.
Shengtong Han
Postdoc
Shengtong Han was a postdoc in the lab from Apr, 2015 to Aug, 2018. He is now a Visiting Assistant Professor in Biostatistics in Joseph J. Zilber School of Public Health, University of Wisconsin, Milwaukee.
Yifan Zhou
PhD student
zhouyf@uchicago.edu
Yifan Zhou (周逸凡) was a student of the PhD program in Biophysical Sciences at University of Chicago (2016-2022). She was jointly supervised by Xin and Dr. Mengjie Chen. Yifan's thesis focused on the study of gene regulation in the context of neuropsychiatric diseases, and statistical methods for analyzing single-cell genomic screening data. Yifan is now working at GRAIL, a biotech. company.
Alan Selewa
PhD student
Alan was a PhD student in Biophysical Sciences at the University of Chicago from 2016-2021. He joined the lab in September, 2017 and is jointly supervised by Dr. Oni Basu. His thesis work combines single-cell ‘omics data from heart and human genetic association data to shed light on the genetics of heart diseases, particularly atrial fibrillation.
PhD student
Nick was a PhD student of the Genetics, Genomics and Systems Biology (GGSB) program at U of Chicago from 2014 to 2020. His PhD work focused on developing and applying statistical methods to understand genetics of complex traits, particularly pre-term birth. Nick currently works at Genentech.
Min Qiao
Visiting student
qiaomin312@gmail.com
Min was a visiting PhD student from UTHealth at Houston. She worked in the lab from 2016 to 2020. Her work included statistical fine-mapping in genomewide association studies and analysis of copy number variants. She is now a staff scientist at Columbia University.
Christie Du
Undergraduate student
Christie Du was an undergraduate, majoring in Biology and minoring in Computer Science. She worked in the lab from 2020-2021 as a research assistant. After graduated from Univ. of Chicago, she joined the Master program of Computer Science at Columbia Univ.
Yanyu Liang
Research assistant
yanyul@uchicago.edu
Yanyu Liang was a Research Assistant in the lab from 2016 to 2017. She did a rotation in the lab in the spring of 2018. She is now a student at Genomics and Systems Biology (GGSB) program, working in the lab of Haky Im.
Zhongshan Li
Visiting scholar
Zhongshan Li (李中山) visited the lab from Sep. 2017 - Sep. 2019 as a visiting scholar. He now works at the Institute of Genomic Medicine, Wenzhou Medical University. Zhongshan’s research focus on identification of pathogenic genetic mutations for human neuropsychiatric disorders using bioinformatics and statistics methods.
Yubin Xie
Research Assistant
Yubin Xie was a research assistant in the lab from October, 2016 to June, 2017. He is now a PhD student at Tri-Institutional PhD Program in Computational Biology & Medicine.
Tiffany Ke
Visiting student
xinxinke294@uchicago.edu
Tiffany, Xinxin KE (柯欣欣) was a visiting student from School of Life Sciences, The Chinese University of Hong Kong. She visited the lab from Oct, 2017 to Mar, 2018.